Detailed information of SNP:
|
SNP ID:
sf0504540613(Gbrowse)
Chromosome: chr05 Position: 4540613 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.61% | 44.39% |
| All Indica | 797 | 94.73% | 5.27% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504540613 | A->G | LOC_Os05g08310(LOC_Os05g08310.1) | Synonymous |