Detailed information of SNP:
|
SNP ID:
sf0504543736(Gbrowse)
Chromosome: chr05 Position: 4543736 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 59.05% | 40.95% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 493 | 6.09% | 93.91% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 90 | 16.67% | 83.33% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504543736 | G->A | INTERGENIC | None |