Detailed information of SNP:
|
SNP ID:
sf0504587602(Gbrowse)
Chromosome: chr05 Position: 4587602 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 89.93% | 10.07% |
| All Indica | 723 | 81.60% | 18.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 96.70% | 3.30% |
| Indica II | 182 | 56.59% | 43.41% |
| Indica Intermediate | 177 | 76.27% | 23.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504587602 | A->C | LOC_Os05g08410(LOC_Os05g08410.2) | INTRON |
| sf0504587602 | A->C | LOC_Os05g08410(LOC_Os05g08410.1) | INTRON |