Detailed information of SNP:
|
SNP ID:
sf0504616779(Gbrowse)
Chromosome: chr05 Position: 4616779 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.55% | 35.45% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 494 | 6.48% | 93.52% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 65 | 7.69% | 92.31% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504616779 | A->G | INTERGENIC | None |