Detailed information of SNP:
|
SNP ID:
sf0504617424(Gbrowse)
Chromosome: chr05 Position: 4617424 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 56.74% | 43.26% |
| All Indica | 767 | 95.44% | 4.56% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 355 | 96.34% | 3.66% |
| Indica II | 204 | 95.10% | 4.90% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504617424 | T->C | INTERGENIC | None |