Detailed information of SNP:
|
SNP ID:
sf0504619321(Gbrowse)
Chromosome: chr05 Position: 4619321 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 60.92% | 39.08% |
| All Indica | 786 | 98.47% | 1.53% |
| All Japonica | 495 | 1.62% | 98.38% |
| Aus | 16 | 87.50% | 12.50% |
| Indica I | 368 | 99.18% | 0.82% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504619321 | A->G | INTERGENIC | None |