Detailed information of SNP:
|
SNP ID:
sf0504620113(Gbrowse)
Chromosome: chr05 Position: 4620113 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 59.75% | 40.25% |
| All Indica | 797 | 96.74% | 3.26% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 17 | 70.59% | 29.41% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504620113 | C->T | INTERGENIC | None |