Detailed information of SNP:
|
SNP ID:
sf0504620215(Gbrowse)
Chromosome: chr05 Position: 4620215 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.55% | 42.45% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504620215 | T->G | INTERGENIC | None |