Detailed information of SNP:
|
SNP ID:
sf0504661466(Gbrowse)
Chromosome: chr05 Position: 4661466 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 62.93% | 37.07% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 494 | 1.42% | 98.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 9 | 33.33% | 66.67% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504661466 | G->A | LOC_Os05g08540(LOC_Os05g08540.1) | INTRON |