Detailed information of SNP:
|
SNP ID:
sf0504710509(Gbrowse)
Chromosome: chr05 Position: 4710509 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 54.50% | 45.50% |
| All Indica | 780 | 93.97% | 6.03% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 367 | 98.91% | 1.09% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 201 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504710509 | T->A | INTERGENIC | None |