Detailed information of SNP:
|
SNP ID:
sf0504754677(Gbrowse)
Chromosome: chr05 Position: 4754677 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.83% | 42.17% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504754677 | C->T | LOC_Os05g08680(LOC_Os05g08680.1) | Non-Synonymous SNP |