Detailed information of SNP:



SNP ID: sf0504754677(Gbrowse)

Chromosome: chr05

Position: 4754677
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 57.83% 42.17%
All Indica798 92.61% 7.39%
All Japonica497 1.01% 98.99%
Aus67 88.06% 11.94%
Indica I375 98.40% 1.60%
Indica II212 89.15% 10.85%
Indica Intermediate211 85.78% 14.22%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 14.29% 85.71%
Intermediate42 35.71% 64.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0504754677 C->T LOC_Os05g08680(LOC_Os05g08680.1) Non-Synonymous SNP