Detailed information of SNP:
|
SNP ID:
sf0504756467(Gbrowse)
Chromosome: chr05 Position: 4756467 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1260 | 50.32% | 49.68% |
| All Indica | 657 | 14.61% | 85.39% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 61 | 24.59% | 75.41% |
| Indica I | 310 | 11.94% | 88.06% |
| Indica II | 189 | 15.34% | 84.66% |
| Indica Intermediate | 158 | 18.99% | 81.01% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504756467 | T->C | INTERGENIC | None |