Detailed information of SNP:
|
SNP ID:
sf0504757132(Gbrowse)
Chromosome: chr05 Position: 4757132 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 57.21% | 42.79% |
| All Indica | 780 | 90.90% | 9.10% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 369 | 88.89% | 11.11% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 203 | 90.64% | 9.36% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504757132 | C->T | LOC_Os05g08694(LOC_Os05g08694.1) | Synonymous |