Detailed information of SNP:
|
SNP ID:
sf0504757144(Gbrowse)
Chromosome: chr05 Position: 4757144 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.85% | 39.15% |
| All Indica | 795 | 95.60% | 4.40% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504757144 | T->C | LOC_Os05g08694(LOC_Os05g08694.1) | Synonymous |