Detailed information of SNP:
|
SNP ID:
sf0504761380(Gbrowse)
Chromosome: chr05 Position: 4761380 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.98% | 38.02% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504761380 | T->C | LOC_Os05g08694(LOC_Os05g08694.1) | INTRON |