Detailed information of SNP:
|
SNP ID:
sf0504766248(Gbrowse)
Chromosome: chr05 Position: 4766248 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.80% | 40.20% |
| All Indica | 794 | 94.33% | 5.67% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504766248 | A->G | INTERGENIC | None |