Detailed information of SNP:
|
SNP ID:
sf0504807214(Gbrowse)
Chromosome: chr05 Position: 4807214 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 76.11% | 23.89% |
| All Indica | 799 | 69.84% | 30.16% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504807214 | A->G | INTERGENIC | None |