Detailed information of SNP:
|
SNP ID:
sf0504828490(Gbrowse)
Chromosome: chr05 Position: 4828490 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.56% | 25.44% |
| All Indica | 799 | 68.84% | 31.16% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504828490 | C->T | LOC_Os05g08780(LOC_Os05g08780.1) | INTRON |