Detailed information of SNP:
|
SNP ID:
sf0504836978(Gbrowse)
Chromosome: chr05 Position: 4836978 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.58% | 24.42% |
| All Indica | 797 | 69.89% | 30.11% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 209 | 64.59% | 35.41% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504836978 | C->A | INTERGENIC | None |