Detailed information of SNP:
|
SNP ID:
sf0504890842(Gbrowse)
Chromosome: chr05 Position: 4890842 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 62.63% | 37.37% |
| All Indica | 777 | 37.32% | 62.68% |
| All Japonica | 481 | 97.51% | 2.49% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 367 | 10.35% | 89.65% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 199 | 47.74% | 52.26% |
| Temperate Japonica | 323 | 97.52% | 2.48% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504890842 | G->A | INTERGENIC | None |