Detailed information of SNP:
|
SNP ID:
sf0504904064(Gbrowse)
Chromosome: chr05 Position: 4904064 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 96.91% | 3.09% |
| All Indica | 741 | 94.87% | 5.13% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 363 | 98.90% | 1.10% |
| Indica II | 185 | 91.35% | 8.65% |
| Indica Intermediate | 193 | 90.67% | 9.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504904064 | G->A | INTERGENIC | None |