Detailed information of SNP:
|
SNP ID:
sf0504907904(Gbrowse)
Chromosome: chr05 Position: 4907904 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 86.78% | 13.22% |
| All Indica | 755 | 84.50% | 15.50% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 55 | 69.09% | 30.91% |
| Indica I | 366 | 92.08% | 7.92% |
| Indica II | 190 | 71.58% | 28.42% |
| Indica Intermediate | 199 | 82.91% | 17.09% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504907904 | T->C | LOC_Os05g08880(LOC_Os05g08880.1) | INTRON |