Detailed information of SNP:
|
SNP ID:
sf0504908945(Gbrowse)
Chromosome: chr05 Position: 4908945 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 93.04% | 6.96% |
| All Indica | 768 | 93.62% | 6.38% |
| All Japonica | 494 | 93.72% | 6.28% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 370 | 96.22% | 3.78% |
| Indica II | 195 | 91.28% | 8.72% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504908945 | A->G | LOC_Os05g08880(LOC_Os05g08880.1) | Non-Synonymous SNP |