Detailed information of SNP:
|
SNP ID:
sf0504913698(Gbrowse)
Chromosome: chr05 Position: 4913698 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 93.52% | 6.48% |
| All Indica | 730 | 94.93% | 5.07% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 20.00% | 80.00% |
| Indica I | 367 | 98.91% | 1.09% |
| Indica II | 180 | 90.56% | 9.44% |
| Indica Intermediate | 183 | 91.26% | 8.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504913698 | A->G | INTERGENIC | None |