Detailed information of SNP:
|
SNP ID:
sf0504919094(Gbrowse)
Chromosome: chr05 Position: 4919094 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 97.05% | 2.95% |
| All Indica | 772 | 94.69% | 5.31% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 200 | 93.00% | 7.00% |
| Indica Intermediate | 202 | 94.06% | 5.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0504919094 | T->C | LOC_Os05g08890(LOC_Os05g08890.1) | INTRON |