Detailed information of SNP:
|
SNP ID:
sf0505000982(Gbrowse)
Chromosome: chr05 Position: 5000982 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 84.58% | 15.42% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 497 | 78.27% | 21.73% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 72.84% | 27.16% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505000982 | G->T | INTERGENIC | None |