Detailed information of SNP:
|
SNP ID:
sf0505023437(Gbrowse)
Chromosome: chr05 Position: 5023437 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.66% | 13.34% |
| All Indica | 798 | 77.07% | 22.93% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505023437 | G->A | INTERGENIC | None |