Detailed information of SNP:
|
SNP ID:
sf0505143957(Gbrowse)
Chromosome: chr05 Position: 5143957 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 96.13% | 3.87% |
| All Indica | 755 | 93.25% | 6.75% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 367 | 97.55% | 2.45% |
| Indica II | 189 | 91.01% | 8.99% |
| Indica Intermediate | 199 | 87.44% | 12.56% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505143957 | A->G | INTERGENIC | None |