Detailed information of SNP:
SNP ID:
sf0505162593(Gbrowse)
Chromosome: chr05 Position: 5162593 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 89.15% | 10.85% |
All Indica | 799 | 96.37% | 3.63% |
All Japonica | 497 | 78.87% | 21.13% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 97.33% | 2.67% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 91.47% | 8.53% |
Temperate Japonica | 335 | 73.43% | 26.57% |
Tropical Japonica | 94 | 91.49% | 8.51% |
Japonica Intermediate | 68 | 88.24% | 11.76% |
Group VI/Aromatic | 14 | 21.43% | 78.57% |
Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0505162593 | G->A | INTERGENIC | None |