Detailed information of SNP:
|
SNP ID:
sf0505304752(Gbrowse)
Chromosome: chr05 Position: 5304752 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 88.23% | 11.77% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505304752 | T->G | INTERGENIC | None |