Detailed information of SNP:
|
SNP ID:
sf0505351650(Gbrowse)
Chromosome: chr05 Position: 5351650 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 89.70% | 10.30% |
| All Indica | 788 | 97.72% | 2.28% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 202 | 97.03% | 2.97% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505351650 | C->T | INTERGENIC | None |