Detailed information of SNP:
|
SNP ID:
sf0505358734(Gbrowse)
Chromosome: chr05 Position: 5358734 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 62.12% | 37.88% |
| All Indica | 791 | 40.46% | 59.54% |
| All Japonica | 493 | 94.12% | 5.88% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 370 | 18.38% | 81.62% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 208 | 40.87% | 59.13% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505358734 | C->T | INTERGENIC | None |