Detailed information of SNP:
|
SNP ID:
sf0505358950(Gbrowse)
Chromosome: chr05 Position: 5358950 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.19% | 41.81% |
| All Indica | 798 | 37.97% | 62.03% |
| All Japonica | 496 | 87.30% | 12.70% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 14.40% | 85.60% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505358950 | C->T | INTERGENIC | None |