Detailed information of SNP:
|
SNP ID:
sf0505359576(Gbrowse)
Chromosome: chr05 Position: 5359576 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 56.44% | 43.56% |
| All Indica | 799 | 35.54% | 64.46% |
| All Japonica | 492 | 86.59% | 13.41% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 12.00% | 88.00% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 334 | 86.83% | 13.17% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505359576 | G->A | INTERGENIC | None |