Detailed information of SNP:
|
SNP ID:
sf0505363448(Gbrowse)
Chromosome: chr05 Position: 5363448 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.51% | 45.49% |
| All Indica | 798 | 66.42% | 33.58% |
| All Japonica | 497 | 29.98% | 70.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 14.63% | 85.37% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505363448 | A->G | INTERGENIC | None |