Detailed information of SNP:
|
SNP ID:
sf0505363565(Gbrowse)
Chromosome: chr05 Position: 5363565 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.62% | 48.38% |
| All Indica | 798 | 35.09% | 64.91% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 11.50% | 88.50% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505363565 | C->T | INTERGENIC | None |