Detailed information of SNP:
|
SNP ID:
sf0505364729(Gbrowse)
Chromosome: chr05 Position: 5364729 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.09% | 45.91% |
| All Indica | 798 | 65.79% | 34.21% |
| All Japonica | 497 | 29.98% | 70.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 14.33% | 85.67% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505364729 | T->C | INTERGENIC | None |