Detailed information of SNP:
|
SNP ID:
sf0505372933(Gbrowse)
Chromosome: chr05 Position: 5372933 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 70.97% | 29.03% |
| All Indica | 798 | 65.41% | 34.59% |
| All Japonica | 495 | 85.45% | 14.55% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505372933 | A->G | INTERGENIC | None |