Detailed information of SNP:
|
SNP ID:
sf0505373357(Gbrowse)
Chromosome: chr05 Position: 5373357 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 71.02% | 28.98% |
| All Indica | 798 | 65.16% | 34.84% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505373357 | G->A | INTERGENIC | None |