Detailed information of SNP:
|
SNP ID:
sf0505433081(Gbrowse)
Chromosome: chr05 Position: 5433081 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.73% | 42.27% |
| All Indica | 798 | 65.91% | 34.09% |
| All Japonica | 497 | 43.66% | 56.34% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 61.07% | 38.93% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 54.76% | 45.24% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505433081 | T->C | INTERGENIC | None |