Detailed information of SNP:
|
SNP ID:
sf0505449730(Gbrowse)
Chromosome: chr05 Position: 5449730 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.55% | 14.45% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 76.06% | 23.94% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505449730 | C->T | INTERGENIC | None |