Detailed information of SNP:
|
SNP ID:
sf0505457732(Gbrowse)
Chromosome: chr05 Position: 5457732 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 53.19% | 46.81% |
| All Indica | 793 | 54.10% | 45.90% |
| All Japonica | 497 | 55.73% | 44.27% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 372 | 46.24% | 53.76% |
| Indica II | 210 | 50.00% | 50.00% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 68.36% | 31.64% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505457732 | C->A | LOC_Os05g09660(LOC_Os05g09660.1) | INTRON |