Detailed information of SNP:
|
SNP ID:
sf0505490559(Gbrowse)
Chromosome: chr05 Position: 5490559 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 94.83% | 5.17% |
| All Indica | 791 | 97.85% | 2.15% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505490559 | G->A | INTERGENIC | None |