Detailed information of SNP:
|
SNP ID:
sf0505490577(Gbrowse)
Chromosome: chr05 Position: 5490577 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 97.85% | 2.15% |
| All Indica | 732 | 96.04% | 3.96% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 343 | 98.25% | 1.75% |
| Indica II | 192 | 95.83% | 4.17% |
| Indica Intermediate | 197 | 92.39% | 7.61% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505490577 | C->T | INTERGENIC | None |