Detailed information of SNP:
|
SNP ID:
sf0505523853(Gbrowse)
Chromosome: chr05 Position: 5523853 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 96.49% | 3.51% |
| All Indica | 795 | 99.25% | 0.75% |
| All Japonica | 479 | 98.75% | 1.25% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 371 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 318 | 98.74% | 1.26% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505523853 | C->T | LOC_Os05g09736(LOC_Os05g09736.1) | Synonymous |