Detailed information of SNP:
|
SNP ID:
sf0505530483(Gbrowse)
Chromosome: chr05 Position: 5530483 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 93.40% | 6.60% |
| All Indica | 788 | 100.00% | 0.00% |
| All Japonica | 471 | 81.74% | 18.26% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 76.92% | 23.08% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505530483 | C->T | INTERGENIC | None |