Detailed information of SNP:
|
SNP ID:
sf0505539197(Gbrowse)
Chromosome: chr05 Position: 5539197 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 76.09% | 23.91% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 51.91% | 48.09% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 64.18% | 35.82% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505539197 | A->G | INTERGENIC | None |