Detailed information of SNP:
|
SNP ID:
sf0505554382(Gbrowse)
Chromosome: chr05 Position: 5554382 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.00% | 42.00% |
| All Indica | 799 | 78.47% | 21.53% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505554382 | A->T | LOC_Os05g10210(LOC_Os05g10210.1) | INTRON |