Detailed information of SNP:
|
SNP ID:
sf0505626837(Gbrowse)
Chromosome: chr05 Position: 5626837 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 97.87% | 2.13% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505626837 | C->T | LOC_Os05g10310(LOC_Os05g10310.3) | INTRON |