Detailed information of SNP:
|
SNP ID:
sf0505629544(Gbrowse)
Chromosome: chr05 Position: 5629544 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 97.17% | 2.83% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505629544 | A->G | LOC_Os05g10310(LOC_Os05g10310.3) | INTRON |
| sf0505629544 | A->G | LOC_Os05g10310(LOC_Os05g10310.2) | INTRON |